Detailed information of SNP:
|
SNP ID:
sf1000092464(Gbrowse)
Chromosome: chr10 Position: 92464 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.26% | 38.74% |
| All Indica | 798 | 35.46% | 64.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 43.73% | 56.27% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000092464 | C->T | INTERGENIC | None |