Detailed information of SNP:
|
SNP ID:
sf1000108717(Gbrowse)
Chromosome: chr10 Position: 108717 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 88.07% | 11.93% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 472 | 66.31% | 33.69% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 59.05% | 40.95% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000108717 | G->T | INTERGENIC | None |