Detailed information of SNP:
|
SNP ID:
sf1000121881(Gbrowse)
Chromosome: chr10 Position: 121881 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 71.54% | 28.46% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000121881 | G->A | LOC_Os10g01164(LOC_Os10g01164.1) | Synonymous |