Detailed information of SNP:
|
SNP ID:
sf1000125769(Gbrowse)
Chromosome: chr10 Position: 125769 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.69% | 29.31% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 26.01% | 73.99% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000125769 | T->A | INTERGENIC | None |