Detailed information of SNP:



SNP ID: sf1000146807(Gbrowse)

Chromosome: chr10

Position: 146807
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1417 71.35% 28.65%
All Indica798 97.87% 2.13%
All Japonica496 27.62% 72.38%
Aus67 95.52% 4.48%
Indica I374 97.06% 2.94%
Indica II213 99.06% 0.94%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 5.67% 94.33%
Tropical Japonica94 89.36% 10.64%
Japonica Intermediate67 50.75% 49.25%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000146807 C->A INTERGENIC None