Detailed information of SNP:
|
SNP ID:
sf1000146807(Gbrowse)
Chromosome: chr10 Position: 146807 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.35% | 28.65% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 496 | 27.62% | 72.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000146807 | C->A | INTERGENIC | None |