Detailed information of SNP:
|
SNP ID:
sf1000203921(Gbrowse)
Chromosome: chr10 Position: 203921 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 70.44% | 29.56% |
| All Indica | 788 | 92.89% | 7.11% |
| All Japonica | 486 | 31.07% | 68.93% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 331 | 12.08% | 87.92% |
| Tropical Japonica | 87 | 87.36% | 12.64% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000203921 | G->A | INTERGENIC | None |