Detailed information of SNP:
|
SNP ID:
sf1000204246(Gbrowse)
Chromosome: chr10 Position: 204246 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1277 | 53.56% | 46.44% |
| All Indica | 696 | 25.72% | 74.28% |
| All Japonica | 469 | 97.65% | 2.35% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 300 | 35.00% | 65.00% |
| Indica II | 197 | 16.75% | 83.25% |
| Indica Intermediate | 199 | 20.60% | 79.40% |
| Temperate Japonica | 329 | 98.78% | 1.22% |
| Tropical Japonica | 77 | 92.21% | 7.79% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000204246 | T->C | INTERGENIC | None |