Detailed information of SNP:
|
SNP ID:
sf1000217960(Gbrowse)
Chromosome: chr10 Position: 217960 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 76.29% | 23.71% |
| All Indica | 768 | 62.24% | 37.76% |
| All Japonica | 489 | 95.91% | 4.09% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 353 | 76.49% | 23.51% |
| Indica II | 212 | 50.00% | 50.00% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000217960 | A->G | LOC_Os10g01360(LOC_Os10g01360.1) | Non-Synonymous SNP |