Detailed information of SNP:
|
SNP ID:
sf1000220182(Gbrowse)
Chromosome: chr10 Position: 220182 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 70.61% | 29.39% |
| All Indica | 763 | 72.21% | 27.79% |
| All Japonica | 480 | 72.08% | 27.92% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 351 | 71.79% | 28.21% |
| Indica II | 207 | 62.80% | 37.20% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 319 | 93.73% | 6.27% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000220182 | C->T | INTERGENIC | None |