Detailed information of SNP:
|
SNP ID:
sf1000220774(Gbrowse)
Chromosome: chr10 Position: 220774 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 55.15% | 44.85% |
| All Indica | 790 | 67.59% | 32.41% |
| All Japonica | 486 | 31.07% | 68.93% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 369 | 84.28% | 15.72% |
| Indica II | 210 | 50.95% | 49.05% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 327 | 11.01% | 88.99% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000220774 | G->A | INTERGENIC | None |