Detailed information of SNP:
|
SNP ID:
sf1000230687(Gbrowse)
Chromosome: chr10 Position: 230687 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 55.33% | 44.67% |
| All Indica | 789 | 66.67% | 33.33% |
| All Japonica | 495 | 31.92% | 68.08% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 369 | 83.74% | 16.26% |
| Indica II | 211 | 50.24% | 49.76% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000230687 | C->A | LOC_Os10g01380(LOC_Os10g01380.1) | INTRON |