Detailed information of SNP:
|
SNP ID:
sf1000231970(Gbrowse)
Chromosome: chr10 Position: 231970 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1323 | 82.92% | 17.08% |
| All Indica | 743 | 87.62% | 12.38% |
| All Japonica | 471 | 77.28% | 22.72% |
| Aus | 56 | 73.21% | 26.79% |
| Indica I | 350 | 87.71% | 12.29% |
| Indica II | 190 | 82.11% | 17.89% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 322 | 93.79% | 6.21% |
| Tropical Japonica | 82 | 25.61% | 74.39% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000231970 | T->G | LOC_Os10g01380(LOC_Os10g01380.1) | INTRON |