Detailed information of SNP:
|
SNP ID:
sf1000238130(Gbrowse)
Chromosome: chr10 Position: 238130 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 50.18% | 49.82% |
| All Indica | 772 | 31.61% | 68.39% |
| All Japonica | 491 | 82.28% | 17.72% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 363 | 13.77% | 86.23% |
| Indica II | 203 | 48.77% | 51.23% |
| Indica Intermediate | 206 | 46.12% | 53.88% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000238130 | C->T | INTERGENIC | None |