Detailed information of SNP:



SNP ID: sf1000238938(Gbrowse)

Chromosome: chr10

Position: 238938
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 97.74% 2.26%
All Indica799 96.87% 3.13%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 94.84% 5.16%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000238938 G->A LOC_Os10g01390(LOC_Os10g01390.1) INTRON