Detailed information of SNP:
|
SNP ID:
sf1000260110(Gbrowse)
Chromosome: chr10 Position: 260110 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 66.04% | 33.96% |
| All Indica | 797 | 96.11% | 3.89% |
| All Japonica | 476 | 17.02% | 82.98% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 325 | 6.15% | 93.85% |
| Tropical Japonica | 85 | 48.24% | 51.76% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000260110 | A->G | INTERGENIC | None |