Detailed information of SNP:
|
SNP ID:
sf1000280959(Gbrowse)
Chromosome: chr10 Position: 280959 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 73.55% | 26.45% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 28.28% | 71.72% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000280959 | G->T | INTERGENIC | None |