Detailed information of SNP:
|
SNP ID:
sf1000283248(Gbrowse)
Chromosome: chr10 Position: 283248 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 91.79% | 8.21% |
| All Indica | 782 | 96.29% | 3.71% |
| All Japonica | 484 | 85.54% | 14.46% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 96.99% | 3.01% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 87 | 44.83% | 55.17% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000283248 | G->A | INTERGENIC | None |