Detailed information of SNP:
|
SNP ID:
sf1000289377(Gbrowse)
Chromosome: chr10 Position: 289377 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 81.39% | 18.61% |
| All Indica | 776 | 69.59% | 30.41% |
| All Japonica | 489 | 96.73% | 3.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 62.46% | 37.54% |
| Indica II | 210 | 66.19% | 33.81% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000289377 | T->A | INTERGENIC | None |