Detailed information of SNP:
|
SNP ID:
sf1000289718(Gbrowse)
Chromosome: chr10 Position: 289718 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 52.16% | 47.84% |
| All Indica | 793 | 34.17% | 65.83% |
| All Japonica | 496 | 73.19% | 26.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 40.75% | 59.25% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000289718 | A->C | INTERGENIC | None |