Detailed information of SNP:
|
SNP ID:
sf1000296002(Gbrowse)
Chromosome: chr10 Position: 296002 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1297 | 56.44% | 43.56% |
| All Indica | 686 | 39.50% | 60.50% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 39.78% | 60.22% |
| Indica II | 158 | 22.15% | 77.85% |
| Indica Intermediate | 166 | 55.42% | 44.58% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 55.88% | 44.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000296002 | A->C | INTERGENIC | None |