Detailed information of SNP:
|
SNP ID:
sf1000327907(Gbrowse)
Chromosome: chr10 Position: 327907 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.78% | 35.22% |
| All Indica | 797 | 42.79% | 57.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000327907 | C->G | LOC_Os10g01510(LOC_Os10g01510.1) | Non-Synonymous SNP |