Detailed information of SNP:
|
SNP ID:
sf1000342179(Gbrowse)
Chromosome: chr10 Position: 342179 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.29% | 31.71% |
| All Indica | 799 | 61.33% | 38.67% |
| All Japonica | 497 | 73.64% | 26.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000342179 | G->C | INTERGENIC | None |