Detailed information of SNP:



SNP ID: sf1000342179(Gbrowse)

Chromosome: chr10

Position: 342179
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1419 68.29% 31.71%
All Indica799 61.33% 38.67%
All Japonica497 73.64% 26.36%
Aus67 100.00% 0.00%
Indica I375 53.60% 46.40%
Indica II213 56.81% 43.19%
Indica Intermediate211 79.62% 20.38%
Temperate Japonica335 94.93% 5.07%
Tropical Japonica94 12.77% 87.23%
Japonica Intermediate68 52.94% 47.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000342179 G->C INTERGENIC None