Detailed information of SNP:
|
SNP ID:
sf1000343144(Gbrowse)
Chromosome: chr10 Position: 343144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 73.33% | 26.67% |
| All Indica | 763 | 67.50% | 32.50% |
| All Japonica | 476 | 77.94% | 22.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 61.21% | 38.79% |
| Indica II | 204 | 63.24% | 36.76% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 330 | 96.06% | 3.94% |
| Tropical Japonica | 82 | 20.73% | 79.27% |
| Japonica Intermediate | 64 | 57.81% | 42.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000343144 | G->A | INTERGENIC | None |