Detailed information of SNP:
|
SNP ID:
sf1000347900(Gbrowse)
Chromosome: chr10 Position: 347900 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 73.23% | 26.77% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000347900 | A->G | LOC_Os10g01540(LOC_Os10g01540.2) | UTR_3_PRIME |
| sf1000347900 | A->G | LOC_Os10g01540(LOC_Os10g01540.1) | UTR_3_PRIME |