Detailed information of SNP:
|
SNP ID:
sf1000373745(Gbrowse)
Chromosome: chr10 Position: 373745 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 80.63% | 19.37% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 477 | 44.44% | 55.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 27.67% | 72.33% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000373745 | T->C | LOC_Os10g01560(LOC_Os10g01560.1) | INTRON |