Detailed information of SNP:



SNP ID: sf1000385935(Gbrowse)

Chromosome: chr10

Position: 385935
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 93.73% 6.27%
All Indica799 100.00% 0.00%
All Japonica497 85.92% 14.08%
Aus67 95.52% 4.48%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 80.00% 20.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000385935 G->A LOC_Os10g01580(LOC_Os10g01580.1) Synonymous