Detailed information of SNP:
|
SNP ID:
sf1000392294(Gbrowse)
Chromosome: chr10 Position: 392294 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 73.58% | 26.42% |
| All Indica | 752 | 67.95% | 32.05% |
| All Japonica | 482 | 77.39% | 22.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 60.87% | 39.13% |
| Indica II | 201 | 63.68% | 36.32% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 84 | 17.86% | 82.14% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000392294 | C->T | INTERGENIC | None |