Detailed information of SNP:



SNP ID: sf1000400399(Gbrowse)

Chromosome: chr10

Position: 400399
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 94.92% 5.08%
All Indica799 100.00% 0.00%
All Japonica496 87.30% 12.70%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 82.04% 17.96%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 42.86% 57.14%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000400399 C->T INTERGENIC None