Detailed information of SNP:
|
SNP ID:
sf1000403968(Gbrowse)
Chromosome: chr10 Position: 403968 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 63.75% | 36.25% |
| All Indica | 776 | 54.12% | 45.88% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 49.59% | 50.41% |
| Indica II | 206 | 45.63% | 54.37% |
| Indica Intermediate | 201 | 71.14% | 28.86% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000403968 | C->T | INTERGENIC | None |