Detailed information of SNP:
|
SNP ID:
sf1000404258(Gbrowse)
Chromosome: chr10 Position: 404258 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 61.07% | 38.93% |
| All Indica | 771 | 52.79% | 47.21% |
| All Japonica | 495 | 72.73% | 27.27% |
| Aus | 53 | 67.92% | 32.08% |
| Indica I | 371 | 48.25% | 51.75% |
| Indica II | 198 | 44.95% | 55.05% |
| Indica Intermediate | 202 | 68.81% | 31.19% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000404258 | T->C | INTERGENIC | None |