Detailed information of SNP:
|
SNP ID:
sf1000447621(Gbrowse)
Chromosome: chr10 Position: 447621 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.97% | 48.03% |
| All Indica | 798 | 33.83% | 66.17% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 210 | 39.52% | 60.48% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000447621 | G->C | INTERGENIC | None |