Detailed information of SNP:
|
SNP ID:
sf1000453279(Gbrowse)
Chromosome: chr10 Position: 453279 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 26.81% | 73.19% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000453279 | A->G | INTERGENIC | None |