Detailed information of SNP:
|
SNP ID:
sf1000463157(Gbrowse)
Chromosome: chr10 Position: 463157 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 76.47% | 23.53% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 460 | 31.74% | 68.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 6.91% | 93.09% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000463157 | T->C | INTERGENIC | None |