Detailed information of SNP:
|
SNP ID:
sf1000465996(Gbrowse)
Chromosome: chr10 Position: 465996 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 69.53% | 30.47% |
| All Indica | 784 | 95.28% | 4.72% |
| All Japonica | 495 | 28.28% | 71.72% |
| Aus | 25 | 76.00% | 24.00% |
| Indica I | 366 | 93.17% | 6.83% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000465996 | C->T | INTERGENIC | None |