Detailed information of SNP:
|
SNP ID:
sf1000490796(Gbrowse)
Chromosome: chr10 Position: 490796 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 92.29% | 7.71% |
| All Indica | 704 | 85.80% | 14.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 77.88% | 22.12% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 184 | 85.87% | 14.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000490796 | G->A | INTERGENIC | None |