Detailed information of SNP:
|
SNP ID:
sf1000500121(Gbrowse)
Chromosome: chr10 Position: 500121 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 94.50% | 5.50% |
| All Indica | 685 | 90.07% | 9.93% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 310 | 90.00% | 10.00% |
| Indica II | 195 | 91.79% | 8.21% |
| Indica Intermediate | 180 | 88.33% | 11.67% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000500121 | G->A | LOC_Os10g01770(LOC_Os10g01770.1) | SNPs that introduce stop codons |