Detailed information of SNP:
|
SNP ID:
sf1000500700(Gbrowse)
Chromosome: chr10 Position: 500700 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 83.85% | 16.15% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 415 | 49.88% | 50.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 266 | 27.44% | 72.56% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 59 | 79.66% | 20.34% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000500700 | T->C | LOC_Os10g01770(LOC_Os10g01770.1) | INTRON |