Detailed information of SNP:
|
SNP ID:
sf1000508856(Gbrowse)
Chromosome: chr10 Position: 508856 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.55% | 8.45% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 486 | 76.54% | 23.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 324 | 66.36% | 33.64% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000508856 | A->C | LOC_Os10g01780(LOC_Os10g01780.1) | Non-Synonymous SNP |