Detailed information of SNP:



SNP ID: sf1000514372(Gbrowse)

Chromosome: chr10

Position: 514372
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 67.66% 32.34%
All Indica795 90.69% 9.31%
All Japonica496 27.22% 72.78%
Aus66 89.39% 10.61%
Indica I373 89.28% 10.72%
Indica II213 92.96% 7.04%
Indica Intermediate209 90.91% 9.09%
Temperate Japonica335 5.67% 94.33%
Tropical Japonica94 85.11% 14.89%
Japonica Intermediate67 53.73% 46.27%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1000514372 T->C INTERGENIC None