Detailed information of SNP:
|
SNP ID:
sf1000514372(Gbrowse)
Chromosome: chr10 Position: 514372 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 67.66% | 32.34% |
| All Indica | 795 | 90.69% | 9.31% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000514372 | T->C | INTERGENIC | None |