Detailed information of SNP:
|
SNP ID:
sf1000514489(Gbrowse)
Chromosome: chr10 Position: 514489 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 68.22% | 31.78% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 495 | 28.28% | 71.72% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000514489 | T->C | INTERGENIC | None |