Detailed information of SNP:
|
SNP ID:
sf1000537874(Gbrowse)
Chromosome: chr10 Position: 537874 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.19% | 4.81% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000537874 | G->A | INTERGENIC | None |