Detailed information of SNP:
|
SNP ID:
sf1000538184(Gbrowse)
Chromosome: chr10 Position: 538184 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1326 | 60.78% | 39.22% |
| All Indica | 732 | 46.45% | 53.55% |
| All Japonica | 480 | 84.79% | 15.21% |
| Aus | 64 | 45.31% | 54.69% |
| Indica I | 340 | 46.76% | 53.24% |
| Indica II | 203 | 47.78% | 52.22% |
| Indica Intermediate | 189 | 44.44% | 55.56% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 83 | 69.88% | 30.12% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000538184 | T->C | INTERGENIC | None |