Detailed information of SNP:
|
SNP ID:
sf1000560544(Gbrowse)
Chromosome: chr10 Position: 560544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 87.54% | 12.46% |
| All Indica | 750 | 81.07% | 18.93% |
| All Japonica | 490 | 95.71% | 4.29% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 350 | 77.43% | 22.57% |
| Indica II | 199 | 87.94% | 12.06% |
| Indica Intermediate | 201 | 80.60% | 19.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000560544 | T->C | LOC_Os10g01860(LOC_Os10g01860.1) | Non-Synonymous SNP |