Detailed information of SNP:
|
SNP ID:
sf1000565964(Gbrowse)
Chromosome: chr10 Position: 565964 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 96.39% | 3.61% |
| All Indica | 770 | 94.29% | 5.71% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 96.66% | 3.34% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 201 | 96.52% | 3.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000565964 | A->G | INTERGENIC | None |