Detailed information of SNP:
|
SNP ID:
sf1000568082(Gbrowse)
Chromosome: chr10 Position: 568082 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 66.29% | 33.71% |
| All Indica | 789 | 93.28% | 6.72% |
| All Japonica | 493 | 23.33% | 76.67% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000568082 | G->T | LOC_Os10g01880(LOC_Os10g01880.1) | INTRON |