Detailed information of SNP:
SNP ID:
sf1000569441(Gbrowse)
Chromosome: chr10 Position: 569441 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1390 | 91.73% | 8.27% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 468 | 77.78% | 22.22% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 313 | 68.05% | 31.95% |
Tropical Japonica | 92 | 100.00% | 0.00% |
Japonica Intermediate | 63 | 93.65% | 6.35% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1000569441 | C->T | INTERGENIC | None |