Detailed information of SNP:
|
SNP ID:
sf1000598032(Gbrowse)
Chromosome: chr10 Position: 598032 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 74.95% | 25.05% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 492 | 31.71% | 68.29% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 10.00% | 90.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000598032 | T->C | LOC_Os10g01950(LOC_Os10g01950.1) | INTRON |