Detailed information of SNP:
|
SNP ID:
sf1000603158(Gbrowse)
Chromosome: chr10 Position: 603158 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.54% | 32.46% |
| All Indica | 797 | 60.60% | 39.40% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 211 | 55.45% | 44.55% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000603158 | A->G | LOC_Os10g01960(LOC_Os10g01960.1) | Synonymous |