Detailed information of SNP:
|
SNP ID:
sf1000603272(Gbrowse)
Chromosome: chr10 Position: 603272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.71% | 37.29% |
| All Indica | 797 | 41.78% | 58.22% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 46.79% | 53.21% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000603272 | C->T | LOC_Os10g01960(LOC_Os10g01960.1) | INTRON |