Detailed information of SNP:
|
SNP ID:
sf1000620967(Gbrowse)
Chromosome: chr10 Position: 620967 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 69.64% | 30.36% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 492 | 28.46% | 71.54% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 7.55% | 92.45% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000620967 | G->A | LOC_Os10g01984(LOC_Os10g01984.1) | INTRON |